This site is a development preview. As such the content and styling may not be final and is subject to change before going into production. To see more information about the redesign click here.

Menu

Documentation:

R / CRAN packages and documentation

Support

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

ivygapSE

This is the development version of ivygapSE; for the stable release version, see ivygapSE.

A SummarizedExperiment for Ivy-GAP data

Bioconductor version: Development (3.18)

Define a SummarizedExperiment and exploratory app for Ivy-GAP glioblastoma image, expression, and clinical data.

Author: Vince Carey

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("ivygapSE")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ivygapSE")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ivygapSE")
ivygapSE -- SummarizedExperiment for Ivy-GAP HTML R Script
Reference Manual PDF

Details

biocViews GeneExpression, Sequencing, Software, Survival, Transcription, Visualization
Version 1.23.1
In Bioconductor since BioC 3.6 (R-3.4) (6 years)
License Artistic-2.0
Depends R (>= 3.5.0), SummarizedExperiment
Imports shiny, survival, survminer, hwriter, plotly, ggplot2, S4Vectors, graphics, stats, utils, UpSetR
Linking To
Suggests knitr, png, limma, grid, DT, randomForest, digest, testthat, rmarkdown, BiocStyle, magick, statmod, codetools
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ivygapSE_1.23.1.tar.gz
Windows Binary ivygapSE_1.23.1.zip
macOS Binary (x86_64) ivygapSE_1.23.1.tgz
macOS Binary (arm64) ivygapSE_1.23.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/ivygapSE
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ivygapSE
Bioc Package Browser https://code.bioconductor.org/browse/ivygapSE/
Package Short Url https://bioconductor.org/packages/ivygapSE/
Package Downloads Report Download Stats