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kissDE

This is the development version of kissDE; for the stable release version, see kissDE.

Retrieves Condition-Specific Variants in RNA-Seq Data

Bioconductor version: Development (3.18)

Retrieves condition-specific variants in RNA-seq data (SNVs, alternative-splicings, indels). It has been developed as a post-treatment of 'KisSplice' but can also be used with user's own data.

Author: Clara Benoit-Pilven [aut], Camille Marchet [aut], Janice Kielbassa [aut], Lilia Brinza [aut], Audric Cologne [aut], Aurélie Siberchicot [aut, cre], Vincent Lacroix [aut], Frank Picard [ctb], Laurent Jacob [ctb], Vincent Miele [ctb]

Maintainer: Aurélie Siberchicot <aurelie.siberchicot at univ-lyon1.fr>

Citation (from within R, enter citation("kissDE")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("kissDE")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews AlternativeSplicing, DifferentialSplicing, ExperimentalDesign, GenomicVariation, RNASeq, Software, Transcriptomics
Version 1.21.0
In Bioconductor since BioC 3.7 (R-3.5) (5.5 years)
License GPL (>= 2)
Depends
Imports aods3, Biobase, DESeq2, DSS, ggplot2, gplots, graphics, grDevices, matrixStats, stats, utils, foreach, doParallel, parallel, shiny, shinycssloaders, ade4, factoextra, DT
Linking To
Suggests BiocStyle, testthat
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Enhances
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary kissDE_1.21.0.zip
macOS Binary (x86_64) kissDE_1.21.0.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/kissDE
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/kissDE
Bioc Package Browser https://code.bioconductor.org/browse/kissDE/
Package Short Url https://bioconductor.org/packages/kissDE/
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