This site is a development preview. As such the content and styling may not be final and is subject to change before going into production. To see more information about the redesign click here.

Menu

Documentation:

R / CRAN packages and documentation

Support

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

lapmix

This is the development version of lapmix; for the stable release version, see lapmix.

Laplace Mixture Model in Microarray Experiments

Bioconductor version: Development (3.18)

Laplace mixture modelling of microarray experiments. A hierarchical Bayesian approach is used, and the hyperparameters are estimated using empirical Bayes. The main purpose is to identify differentially expressed genes.

Author: Yann Ruffieux, contributions from Debjani Bhowmick, Anthony C. Davison, and Darlene R. Goldstein

Maintainer: Yann Ruffieux <yann.ruffieux at epfl.ch>

Citation (from within R, enter citation("lapmix")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("lapmix")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("lapmix")
lapmix example PDF R Script
Reference Manual PDF

Details

biocViews DifferentialExpression, Microarray, OneChannel, Software
Version 1.67.0
In Bioconductor since BioC 1.9 (R-2.4) (17 years)
License GPL (>= 2)
Depends R (>= 2.6.0), stats
Imports Biobase, graphics, grDevices, methods, stats, tools, utils
Linking To
Suggests
System Requirements
Enhances
URL http://www.r-project.org http://www.bioconductor.org http://stat.epfl.ch
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package lapmix_1.67.0.tar.gz
Windows Binary lapmix_1.67.0.zip
macOS Binary (x86_64) lapmix_1.67.0.tgz
macOS Binary (arm64) lapmix_1.67.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/lapmix
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/lapmix
Bioc Package Browser https://code.bioconductor.org/browse/lapmix/
Package Short Url https://bioconductor.org/packages/lapmix/
Package Downloads Report Download Stats