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logicFS

This is the development version of logicFS; for the stable release version, see logicFS.

Identification of SNP Interactions

Bioconductor version: Development (3.18)

Identification of interactions between binary variables using Logic Regression. Can, e.g., be used to find interesting SNP interactions. Contains also a bagging version of logic regression for classification.

Author: Holger Schwender, Tobias Tietz

Maintainer: Holger Schwender <holger.schw at gmx.de>

Citation (from within R, enter citation("logicFS")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("logicFS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("logicFS")
logicFS Manual PDF R Script
Reference Manual PDF

Details

biocViews Classification, Genetics, SNP, Software
Version 2.21.0
In Bioconductor since BioC 1.8 (R-2.3) (17.5 years)
License LGPL (>= 2)
Depends LogicReg, mcbiopi, survival
Imports graphics, methods, stats
Linking To
Suggests genefilter, siggenes
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me
Suggests Me trio
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package logicFS_2.21.0.tar.gz
Windows Binary logicFS_2.21.0.zip
macOS Binary (x86_64) logicFS_2.21.0.tgz
macOS Binary (arm64) logicFS_2.21.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/logicFS
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/logicFS
Bioc Package Browser https://code.bioconductor.org/browse/logicFS/
Package Short Url https://bioconductor.org/packages/logicFS/
Package Downloads Report Download Stats