mfa

This is the development version of mfa; for the stable release version, see mfa.

Bayesian hierarchical mixture of factor analyzers for modelling genomic bifurcations

Bioconductor version: Development (3.18)

MFA models genomic bifurcations using a Bayesian hierarchical mixture of factor analysers.

Author: Kieran Campbell [aut, cre]

Maintainer: Kieran Campbell <kieranrcampbell at gmail.com>

Citation (from within R, enter citation("mfa")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("mfa")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("mfa")

Vignette Title	HTML	R Script
Reference Manual	PDF

Details

biocViews	Bayesian, GeneExpression, ImmunoOncology, RNASeq, SingleCell, Software
Version	1.23.0
In Bioconductor since	BioC 3.6 (R-3.4) (6 years)
License	GPL (>= 2)
Depends	R (>= 3.4.0)
Imports	methods, stats, ggplot2, Rcpp, dplyr, ggmcmc, MCMCpack, MCMCglmm, coda, magrittr, tibble, Biobase
Linking To	Rcpp
Suggests	knitr, rmarkdown, BiocStyle, testthat
System Requirements
Enhances
URL

Depends On Me
Imports Me
Suggests Me	splatter
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	mfa_1.23.0.tar.gz
Windows Binary	mfa_1.23.0.zip
macOS Binary (x86_64)	mfa_1.23.0.tgz
macOS Binary (arm64)	mfa_1.23.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/mfa
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/mfa
Bioc Package Browser	https://code.bioconductor.org/browse/mfa/
Package Short Url	https://bioconductor.org/packages/mfa/
Package Downloads Report	Download Stats