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miRNAtap

This is the development version of miRNAtap; for the stable release version, see miRNAtap.

miRNAtap: microRNA Targets - Aggregated Predictions

Bioconductor version: Development (3.18)

The package facilitates implementation of workflows requiring miRNA predictions, it allows to integrate ranked miRNA target predictions from multiple sources available online and aggregate them with various methods which improves quality of predictions above any of the single sources. Currently predictions are available for Homo sapiens, Mus musculus and Rattus norvegicus (the last one through homology translation).

Author: Maciej Pajak, T. Ian Simpson

Maintainer: T. Ian Simpson <ian.simpson at ed.ac.uk>

Citation (from within R, enter citation("miRNAtap")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("miRNAtap")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("miRNAtap")
miRNAtap PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews Classification, Microarray, Sequencing, Software, miRNA
Version 1.35.0
In Bioconductor since BioC 3.0 (R-3.1) (9 years)
License GPL-2
Depends R (>= 3.3.0), AnnotationDbi
Imports DBI, RSQLite, stringr, sqldf, plyr, methods
Linking To
Suggests topGO, org.Hs.eg.db, miRNAtap.db, testthat
System Requirements
Enhances
URL
See More
Depends On Me miRNAtap.db
Imports Me miRNAtap.db, SpidermiR
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package miRNAtap_1.35.0.tar.gz
Windows Binary miRNAtap_1.35.0.zip (64-bit only)
macOS Binary (x86_64) miRNAtap_1.35.0.tgz
macOS Binary (arm64) miRNAtap_1.35.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/miRNAtap
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/miRNAtap
Bioc Package Browser https://code.bioconductor.org/browse/miRNAtap/
Package Short Url https://bioconductor.org/packages/miRNAtap/
Package Downloads Report Download Stats