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miRcomp

This is the development version of miRcomp; for the stable release version, see miRcomp.

Tools to assess and compare miRNA expression estimatation methods

Bioconductor version: Development (3.18)

Based on a large miRNA dilution study, this package provides tools to read in the raw amplification data and use these data to assess the performance of methods that estimate expression from the amplification curves.

Author: Matthew N. McCall <mccallm at gmail.com>, Lauren Kemperman <lkemperm at u.rochester.edu>

Maintainer: Matthew N. McCall <mccallm at gmail.com>

Citation (from within R, enter citation("miRcomp")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("miRcomp")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("miRcomp")
Assessment and comparison of miRNA expression estimation methods (miRcomp) HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews Preprocessing, QualityControl, Software, qPCR
Version 1.31.0
In Bioconductor since BioC 3.2 (R-3.2) (8 years)
License GPL-3 | file LICENSE
Depends R (>= 3.2), Biobase(>= 2.22.0), miRcompData
Imports utils, methods, graphics, KernSmooth, stats
Linking To
Suggests BiocStyle, knitr, rmarkdown, RUnit, BiocGenerics, shiny
System Requirements
Enhances
URL
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Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package miRcomp_1.31.0.tar.gz
Windows Binary miRcomp_1.31.0.zip
macOS Binary (x86_64) miRcomp_1.31.0.tgz
macOS Binary (arm64) miRcomp_1.31.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/miRcomp
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/miRcomp
Bioc Package Browser https://code.bioconductor.org/browse/miRcomp/
Package Short Url https://bioconductor.org/packages/miRcomp/
Package Downloads Report Download Stats