mosaics
This is the development version of mosaics; for the stable release version, see mosaics.
MOSAiCS (MOdel-based one and two Sample Analysis and Inference for ChIP-Seq)
Bioconductor version: Development (3.18)
This package provides functions for fitting MOSAiCS and MOSAiCS-HMM, a statistical framework to analyze one-sample or two-sample ChIP-seq data of transcription factor binding and histone modification.
Author: Dongjun Chung, Pei Fen Kuan, Rene Welch, Sunduz Keles
Maintainer: Dongjun Chung <dongjun.chung at gmail.com>
citation("mosaics")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("mosaics")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("mosaics")| MOSAiCS | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Bioinformatics, ChIPseq, Genetics, Sequencing, Software, Transcription |
| Version | 2.39.0 |
| In Bioconductor since | BioC 2.8 (R-2.13) (12.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 3.0.0), methods, graphics, Rcpp |
| Imports | MASS, splines, lattice, IRanges, GenomicRanges, GenomicAlignments, Rsamtools, GenomeInfoDb, S4Vectors |
| Linking To | Rcpp |
| Suggests | mosaicsExample |
| System Requirements | Perl |
| Enhances | parallel |
| URL | http://groups.google.com/group/mosaics_user_group |
See More
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | mosaics_2.39.0.tar.gz |
| Windows Binary | mosaics_2.39.0.zip (64-bit only) |
| macOS Binary (x86_64) | mosaics_2.39.0.tgz |
| macOS Binary (arm64) | mosaics_2.39.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/mosaics |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/mosaics |
| Bioc Package Browser | https://code.bioconductor.org/browse/mosaics/ |
| Package Short Url | https://bioconductor.org/packages/mosaics/ |
| Package Downloads Report | Download Stats |