multiSight
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This is the development version of multiSight; for the stable release version, see multiSight.
Multi-omics Classification, Functional Enrichment and Network Inference analysis
Bioconductor version: Development (3.18)
multiSight is an R package providing functions to analyze your omic datasets in a multi-omics manner based on Stouffer's p-value pooling and multi-block statistical methods. For each omic dataset you furnish, multiSight provides classification models with feature selection you can use as biosignature: (i) To forecast phenotypes (e.g. to diagnostic tasks, histological subtyping), (ii) To design Pathways and gene ontology enrichments (Over Representation Analysis), (iii) To build Network inference linked to PubMed querying to make assumptions easier and data-driven. Main analysis are embedded in an user-friendly graphical interface.
Author: Florian Jeanneret [cre, aut] 
, Stephane Gazut [aut]
Maintainer: Florian Jeanneret <florian.jeanneret at cea.fr>
citation("multiSight")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("multiSight")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | Classification, DifferentialExpression, GeneSetEnrichment, Network, NetworkInference, Pathways, RNASeq, Software, miRNA |
| Version | 1.9.1 |
| In Bioconductor since | BioC 3.13 (R-4.1) (2 years) |
| License | CeCILL + file LICENSE |
| Depends | R (>= 4.1) |
| Imports | golem, config, R6, shiny, shinydashboard, DT, dplyr, stringr, anyLib, caret, biosigner, mixOmics, stats, DESeq2, clusterProfiler, rWikiPathways, ReactomePA, enrichplot, ppcor, metap, infotheo, igraph, networkD3, easyPubMed, utils, htmltools, rmarkdown, ggnewscale |
| Linking To | |
| Suggests | org.Mm.eg.db, rlang, markdown, attempt, processx, testthat, knitr, BiocStyle |
| System Requirements | |
| Enhances | |
| URL | |
| Bug Reports | https://github.com/Fjeanneret/multiSight/issues |
See More
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/multiSight |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/multiSight |
| Package Short Url | https://bioconductor.org/packages/multiSight/ |
| Package Downloads Report | Download Stats |