multiSight
Multi-omics Classification, Functional Enrichment and Network Inference analysis
Bioconductor version: Release (3.17)
multiSight is an R package providing functions to analyze your omic datasets in a multi-omics manner based on Stouffer's p-value pooling and multi-block statistical methods. For each omic dataset you furnish, multiSight provides classification models with feature selection you can use as biosignature: (i) To forecast phenotypes (e.g. to diagnostic tasks, histological subtyping), (ii) To design Pathways and gene ontology enrichments (Over Representation Analysis), (iii) To build Network inference linked to PubMed querying to make assumptions easier and data-driven. Main analysis are embedded in an user-friendly graphical interface.
Author: Florian Jeanneret [cre, aut] 
, Stephane Gazut [aut]
Maintainer: Florian Jeanneret <florian.jeanneret at cea.fr>
citation("multiSight")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("multiSight")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("multiSight")| multiSight quick start guide | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | Classification, DifferentialExpression, GeneSetEnrichment, Network, NetworkInference, Pathways, RNASeq, Software, miRNA |
| Version | 1.7.0 |
| In Bioconductor since | BioC 3.13 (R-4.1) (2 years) |
| License | CeCILL + file LICENSE |
| Depends | R (>= 4.1) |
| Imports | golem, config, R6, shiny, shinydashboard, DT, dplyr, stringr, anyLib, caret, biosigner, mixOmics, stats, DESeq2, clusterProfiler, rWikiPathways, ReactomePA, enrichplot, ppcor, metap, infotheo, igraph, networkD3, easyPubMed, utils, htmltools, rmarkdown, ggnewscale |
| Linking To | |
| Suggests | org.Mm.eg.db, rlang, markdown, attempt, processx, testthat, knitr, BiocStyle |
| System Requirements | |
| Enhances | |
| URL | |
| Bug Reports | https://github.com/Fjeanneret/multiSight/issues |
See More
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | multiSight_1.7.0.tar.gz |
| Windows Binary | multiSight_1.7.0.zip |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | multiSight_1.7.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/multiSight |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/multiSight |
| Bioc Package Browser | https://code.bioconductor.org/browse/multiSight/ |
| Package Short Url | https://bioconductor.org/packages/multiSight/ |
| Package Downloads Report | Download Stats |