ndexr
This is the development version of ndexr; for the stable release version, see ndexr.
NDEx R client library
Bioconductor version: Development (3.18)
This package offers an interface to NDEx servers, e.g. the public server at http://ndexbio.org/. It can retrieve and save networks via the API. Networks are offered as RCX object and as igraph representation.
Author: Florian Auer [cre, aut] , Frank Kramer [ctb], Alex Ishkin [ctb], Dexter Pratt [ctb]
Maintainer: Florian Auer <florian.auer at informatik.uni-augsburg.de>
citation("ndexr")
):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("ndexr")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ndexr")
NDExR Vignette | HTML | R Script |
Reference Manual | ||
NEWS | Text | |
LICENSE | Text |
Details
biocViews | DataImport, Network, Pathways, Software |
Version | 1.23.0 |
In Bioconductor since | BioC 3.6 (R-3.4) (6 years) |
License | BSD_3_clause + file LICENSE |
Depends | RCX |
Imports | httr, jsonlite, plyr, tidyr |
Linking To | |
Suggests | BiocStyle, testthat, knitr, rmarkdown |
System Requirements | |
Enhances | |
URL | https://github.com/frankkramer-lab/ndexr |
Bug Reports | https://github.com/frankkramer-lab/ndexr/issues |
See More
Depends On Me | |
Imports Me | |
Suggests Me | netgsa |
Links To Me | |
Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | ndexr_1.23.0.tar.gz |
Windows Binary | ndexr_1.23.0.zip |
macOS Binary (x86_64) | ndexr_1.23.0.tgz |
macOS Binary (arm64) | ndexr_1.23.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/ndexr |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ndexr |
Bioc Package Browser | https://code.bioconductor.org/browse/ndexr/ |
Package Short Url | https://bioconductor.org/packages/ndexr/ |
Package Downloads Report | Download Stats |