This site is a development preview. As such the content and styling may not be final and is subject to change before going into production. To see more information about the redesign click here.

Menu

Documentation:

R / CRAN packages and documentation

Support

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

nondetects

This is the development version of nondetects; for the stable release version, see nondetects.

Non-detects in qPCR data

Bioconductor version: Development (3.18)

Methods to model and impute non-detects in the results of qPCR experiments.

Author: Matthew N. McCall <mccallm at gmail.com>, Valeriia Sherina <valery.sherina at gmail.com>

Maintainer: Valeriia Sherina <valery.sherina at gmail.com>

Citation (from within R, enter citation("nondetects")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("nondetects")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("nondetects")
Title of your vignette HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews AssayDomain, GeneExpression, Preprocessing, Software, Technology, WorkflowStep, qPCR
Version 2.31.0
In Bioconductor since BioC 2.14 (R-3.1) (9.5 years)
License GPL-3
Depends R (>= 3.2), Biobase(>= 2.22.0)
Imports limma, mvtnorm, utils, methods, arm, HTqPCR(>= 1.16.0)
Linking To
Suggests knitr, rmarkdown, BiocStyle(>= 1.0.0), RUnit, BiocGenerics(>= 0.8.0)
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package nondetects_2.31.0.tar.gz
Windows Binary nondetects_2.31.0.zip
macOS Binary (x86_64) nondetects_2.31.0.tgz
macOS Binary (arm64) nondetects_2.31.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/nondetects
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/nondetects
Bioc Package Browser https://code.bioconductor.org/browse/nondetects/
Package Short Url https://bioconductor.org/packages/nondetects/
Package Downloads Report Download Stats