nucleR

This is the development version of nucleR; for the stable release version, see nucleR.

Nucleosome positioning package for R

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("nucleR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("nucleR")

Vignette Title	HTML	R Script
Reference Manual	PDF
NEWS	Text

Details

biocViews	ChIPSeq, Coverage, DataImport, Genetics, Microarray, NucleosomePositioning, QualityControl, Sequencing, Software
Version	2.33.0
In Bioconductor since	BioC 2.9 (R-2.14) (12 years)
License	LGPL (>= 3)
Depends	R (>= 3.5.0), methods
Imports	Biobase, BiocGenerics, Biostrings, GenomeInfoDb, GenomicRanges, IRanges, Rsamtools, S4Vectors, ShortRead, dplyr, ggplot2, magrittr, parallel, stats, utils, grDevices
Linking To
Suggests	BiocStyle, knitr, rmarkdown, testthat
System Requirements
Enhances
URL

See More

Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	nucleR_2.33.0.tar.gz
Windows Binary	nucleR_2.33.0.zip (64-bit only)
macOS Binary (x86_64)	nucleR_2.33.0.tgz
macOS Binary (arm64)	nucleR_2.33.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/nucleR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/nucleR
Bioc Package Browser	https://code.bioconductor.org/browse/nucleR/
Package Short Url	https://bioconductor.org/packages/nucleR/
Package Downloads Report	Download Stats