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phenopath

This is the development version of phenopath; for the stable release version, see phenopath.

Genomic trajectories with heterogeneous genetic and environmental backgrounds

Bioconductor version: Development (3.18)

PhenoPath infers genomic trajectories (pseudotimes) in the presence of heterogeneous genetic and environmental backgrounds and tests for interactions between them.

Author: Kieran Campbell

Maintainer: Kieran Campbell <kieranrcampbell at gmail.com>

Citation (from within R, enter citation("phenopath")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("phenopath")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("phenopath")
Vignette Title HTML R Script
Reference Manual PDF

Details

biocViews Bayesian, GeneExpression, ImmunoOncology, PrincipalComponent, RNASeq, SingleCell, Software
Version 1.25.0
In Bioconductor since BioC 3.6 (R-3.4) (6 years)
License Apache License (== 2.0)
Depends
Imports Rcpp (>= 0.12.8), SummarizedExperiment, methods, stats, dplyr, tibble, ggplot2, tidyr
Linking To Rcpp
Suggests knitr, rmarkdown, forcats, testthat, BiocStyle, SingleCellExperiment
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me
Suggests Me splatter
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package phenopath_1.25.0.tar.gz
Windows Binary phenopath_1.25.0.zip
macOS Binary (x86_64) phenopath_1.25.0.tgz
macOS Binary (arm64) phenopath_1.25.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/phenopath
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/phenopath
Bioc Package Browser https://code.bioconductor.org/browse/phenopath/
Package Short Url https://bioconductor.org/packages/phenopath/
Package Downloads Report Download Stats