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pogos

This is the development version of pogos; for the stable release version, see pogos.

PharmacOGenomics Ontology Support

Bioconductor version: Development (3.18)

Provide simple utilities for querying bhklab PharmacoDB, modeling API outputs, and integrating to cell and compound ontologies.

Author: Vince Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("pogos")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("pogos")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pogos")
pogos -- simple interface to bhklab PharmacoDB with emphasis on ontology HTML R Script
Reference Manual PDF

Details

biocViews ImmunoOncology, Pharmacogenomics, PooledScreens, Software
Version 1.21.0
In Bioconductor since BioC 3.7 (R-3.5) (5.5 years)
License Artistic-2.0
Depends R (>= 3.5.0), rjson (>= 0.2.15), httr (>= 1.3.1)
Imports methods, S4Vectors, utils, shiny, ontoProc, ggplot2, graphics
Linking To
Suggests knitr, DT, ontologyPlot, testthat, rmarkdown, BiocStyle
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me
Suggests Me BiocOncoTK
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package pogos_1.21.0.tar.gz
Windows Binary pogos_1.21.0.zip (64-bit only)
macOS Binary (x86_64) pogos_1.21.0.tgz
macOS Binary (arm64) pogos_1.21.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/pogos
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/pogos
Bioc Package Browser https://code.bioconductor.org/browse/pogos/
Package Short Url https://bioconductor.org/packages/pogos/
Package Downloads Report Download Stats