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rols

This is the development version of rols; for the stable release version, see rols.

An R interface to the Ontology Lookup Service

Bioconductor version: Development (3.18)

The rols package is an interface to the Ontology Lookup Service (OLS) to access and query hundred of ontolgies directly from R.

Author: Laurent Gatto [aut, cre], Tiage Chedraoui Silva [ctb], Andrew Clugston [ctb]

Maintainer: Laurent Gatto <laurent.gatto at uclouvain.be>

Citation (from within R, enter citation("rols")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("rols")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rols")
An R interface to the Ontology Lookup Service HTML R Script
Reference Manual PDF

Details

biocViews Annotation, GO, ImmunoOncology, MassSpectrometry, Software
Version 2.29.0
In Bioconductor since BioC 2.11 (R-2.15) (11 years)
License GPL-2
Depends methods
Imports httr, progress, jsonlite, utils, Biobase, BiocGenerics(>= 0.23.1)
Linking To
Suggests GO.db, knitr (>= 1.1.0), BiocStyle(>= 2.5.19), testthat, lubridate, DT, rmarkdown
System Requirements
Enhances
URL http://lgatto.github.com/rols/
Bug Reports https://github.com/lgatto/rols/issues
See More
Depends On Me
Imports Me struct
Suggests Me MSnbase, RforProteomics, spatialHeatmap
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package rols_2.29.0.tar.gz
Windows Binary rols_2.29.0.zip
macOS Binary (x86_64) rols_2.29.0.tgz
macOS Binary (arm64) rols_2.29.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/rols
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rols
Bioc Package Browser https://code.bioconductor.org/browse/rols/
Package Short Url https://bioconductor.org/packages/rols/
Package Downloads Report Download Stats