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rpx

This is the development version of rpx; for the stable release version, see rpx.

R Interface to the ProteomeXchange Repository

Bioconductor version: Development (3.18)

The rpx package implements an interface to proteomics data submitted to the ProteomeXchange consortium.

Author: Laurent Gatto

Maintainer: Laurent Gatto <laurent.gatto at uclouvain.be>

Citation (from within R, enter citation("rpx")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("rpx")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rpx")
An R interface to the ProteomeXchange repository HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataImport, ImmunoOncology, MassSpectrometry, Proteomics, Software, ThirdPartyClient
Version 2.9.0
In Bioconductor since BioC 2.14 (R-3.1) (9.5 years)
License GPL-2
Depends R (>= 3.5.0), methods
Imports BiocFileCache, jsonlite, xml2, RCurl, curl, utils
Linking To
Suggests Biostrings, BiocStyle, testthat, knitr, tibble, rmarkdown
System Requirements
Enhances
URL https://github.com/lgatto/rpx
Bug Reports https://github.com/lgatto/rpx/issues
See More
Depends On Me
Imports Me
Suggests Me MsExperiment, MSnbase, PSMatch, RforProteomics
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package rpx_2.9.0.tar.gz
Windows Binary rpx_2.9.0.zip
macOS Binary (x86_64) rpx_2.9.0.tgz
macOS Binary (arm64) rpx_2.9.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/rpx
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rpx
Bioc Package Browser https://code.bioconductor.org/browse/rpx/
Package Short Url https://bioconductor.org/packages/rpx/
Package Downloads Report Download Stats