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scTHI

This is the development version of scTHI; for the stable release version, see scTHI.

Indentification of significantly activated ligand-receptor interactions across clusters of cells from single-cell RNA sequencing data

Bioconductor version: Development (3.18)

scTHI is an R package to identify active pairs of ligand-receptors from single cells in order to study,among others, tumor-host interactions. scTHI contains a set of signatures to classify cells from the tumor microenvironment.

Author: Francesca Pia Caruso [aut], Michele Ceccarelli [aut, cre]

Maintainer: Michele Ceccarelli <m.ceccarelli at gmail.com>

Citation (from within R, enter citation("scTHI")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("scTHI")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("scTHI")
Using scTHI HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews SingleCell, Software
Version 1.13.0
In Bioconductor since BioC 3.11 (R-4.0) (3.5 years)
License GPL-2
Depends R (>= 4.0)
Imports BiocParallel, Rtsne, grDevices, graphics, stats
Linking To
Suggests scTHI.data, knitr, rmarkdown, BiocStyle
System Requirements
Enhances
URL
Bug Reports https://github.com/miccec/scTHI/issues
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package scTHI_1.13.0.tar.gz
Windows Binary scTHI_1.13.0.zip (64-bit only)
macOS Binary (x86_64) scTHI_1.13.0.tgz
macOS Binary (arm64) scTHI_1.13.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/scTHI
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/scTHI
Bioc Package Browser https://code.bioconductor.org/browse/scTHI/
Package Short Url https://bioconductor.org/packages/scTHI/
Package Downloads Report Download Stats