switchde

This is the development version of switchde; for the stable release version, see switchde.

Switch-like differential expression across single-cell trajectories

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("switchde")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("switchde")

An overview of the switchde package	HTML	R Script
Reference Manual	PDF
NEWS	Text

Details

biocViews	DifferentialExpression, GeneExpression, ImmunoOncology, RNASeq, Regression, SingleCell, Software, Transcriptomics
Version	1.27.0
In Bioconductor since	BioC 3.4 (R-3.3) (7 years)
License	GPL (>= 2)
Depends	R (>= 3.4), SingleCellExperiment
Imports	SummarizedExperiment, dplyr, ggplot2, methods, stats
Linking To
Suggests	knitr, rmarkdown, BiocStyle, testthat, numDeriv, tidyr
System Requirements
Enhances
URL	https://github.com/kieranrcampbell/switchde
Bug Reports	https://github.com/kieranrcampbell/switchde

See More

Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	switchde_1.27.0.tar.gz
Windows Binary	switchde_1.27.0.zip
macOS Binary (x86_64)	switchde_1.27.0.tgz
macOS Binary (arm64)	switchde_1.27.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/switchde
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/switchde
Bioc Package Browser	https://code.bioconductor.org/browse/switchde/
Package Short Url	https://bioconductor.org/packages/switchde/
Package Downloads Report	Download Stats