JASPAR2022

This is the development version of JASPAR2022; for the stable release version, see JASPAR2022.

Data package for JASPAR database (version 2022)

Bioconductor version: Development (3.18)

JASPAR is an open-access database containing manually curated, non-redundant transcription factor (TF) binding profiles for TFs across six taxonomic groups. In this 9th release, we expanded the CORE collection with 341 new profiles (148 for plants, 101 for vertebrates, 85 for urochordates, and 7 for insects), which corresponds to a 19% expansion over the previous release. To search thisdatabases, please use the package TFBSTools (>= 1.31.2).

Author: Damir Baranasic [aut, cre]

Maintainer: Damir Baranasic <damir.baranasic at lms.mrc.ac.uk>

Citation (from within R, enter citation("JASPAR2022")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("JASPAR2022")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("JASPAR2022")

JASPAR2022	HTML	R Script
Reference Manual	PDF

Details

biocViews	AnnotationData, AnnotationHub, FunctionalAnnotation
Version	0.99.7
License	GPL-2
Depends	R (>= 4.1.0), methods, BiocFileCache, utils
Imports
Linking To
Suggests	knitr, rmarkdown, BiocStyle, TFBSTools(>= 1.31.2)
System Requirements
Enhances
URL	http://jaspar.genereg.net/

Depends On Me
Imports Me
Suggests Me	GRaNIE, MethReg
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	JASPAR2022_0.99.7.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Package Short Url	https://bioconductor.org/packages/JASPAR2022/
Package Downloads Report	Download Stats