This site is a development preview. As such the content and styling may not be final and is subject to change before going into production. To see more information about the redesign click here.

Menu

Documentation:

R / CRAN packages and documentation

Support

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

SNPlocs.Hsapiens.dbSNP155.GRCh38

This is the development version of SNPlocs.Hsapiens.dbSNP155.GRCh38; for the stable release version, see SNPlocs.Hsapiens.dbSNP155.GRCh38.

Human SNP locations and alleles extracted from dbSNP Build 155 and placed on the GRCh38/hg38 assembly

Bioconductor version: Development (3.18)

The 949,021,448 SNPs in this package were extracted from the RefSNP JSON files for chromosomes 1-22, X, Y, and MT, located at https://ftp.ncbi.nih.gov/snp/archive/b155/JSON/ (these files were created by NCBI in May 2021). These SNPs can be "injected" in BSgenome.Hsapiens.NCBI.GRCh38 or BSgenome.Hsapiens.UCSC.hg38.

Author: Hervé Pagès

Maintainer: Hervé Pagès <hpages.on.github at gmail.com>

Citation (from within R, enter citation("SNPlocs.Hsapiens.dbSNP155.GRCh38")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("SNPlocs.Hsapiens.dbSNP155.GRCh38")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews AnnotationData, Genetics, Homo_sapiens, SNPlocs
Version 0.99.24
License Artistic-2.0
Depends R (>= 4.2.0), BSgenome(>= 1.67.2)
Imports methods, utils, BiocGenerics, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, BSgenome
Linking To
Suggests Biostrings, BSgenome.Hsapiens.UCSC.hg38
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me
Suggests Me MungeSumstats
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SNPlocs.Hsapiens.dbSNP155.GRCh38_0.99.24.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Package Short Url https://bioconductor.org/packages/SNPlocs.Hsapiens.dbSNP155.GRCh38/
Package Downloads Report Download Stats