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CopyhelpeR

This is the development version of CopyhelpeR; for the stable release version, see CopyhelpeR.

Helper files for CopywriteR

Bioconductor version: Development (3.18)

This package contains the helper files that are required to run the Bioconductor package CopywriteR. It contains pre-assembled 1kb bin GC-content and mappability files for the reference genomes hg18, hg19, hg38, mm9 and mm10. In addition, it contains a blacklist filter to remove regions that display CNV. Files are stored as GRanges objects from the GenomicRanges Bioconductor package.

Author: Thomas Kuilman

Maintainer: Oscar Krijgsman <o.krijgsman at nki.nl>

Citation (from within R, enter citation("CopyhelpeR")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("CopyhelpeR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CopyhelpeR")
CopyhelpeR PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews ExperimentData, GenomicSequence, Homo_sapiens
Version 1.33.0
License GPL-2
Depends R (>= 3.5.0)
Imports
Linking To
Suggests BiocStyle
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CopyhelpeR_1.33.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/CopyhelpeR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CopyhelpeR
Package Short Url https://bioconductor.org/packages/CopyhelpeR/
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