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HarmonizedTCGAData

This is the development version of HarmonizedTCGAData; for the stable release version, see HarmonizedTCGAData.

Processed Harmonized TCGA Data of Five Selected Cancer Types

Bioconductor version: Development (3.18)

This package contains the processed harmonized TCGA data of five cancer types used in "Tianle Ma and Aidong Zhang, Integrate Multi-omic Data Using Affinity Network Fusion (ANF) for Cancer Patient Clustering".

Author: Tianle Ma

Maintainer: Tianle Ma <tianlema at buffalo.edu>

Citation (from within R, enter citation("HarmonizedTCGAData")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("HarmonizedTCGAData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HarmonizedTCGAData")
Patient Affinity Matrices Derived from Harmonized TCGA Dataset HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews CancerData, ExperimentData, ReproducibleResearch
Version 1.23.0
License GPL-3
Depends R (>= 3.4.0)
Imports ExperimentHub
Linking To
Suggests AnnotationHub, knitr, rmarkdown, igraph, survival, ANF, stats, testthat
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package HarmonizedTCGAData_1.23.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/HarmonizedTCGAData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/HarmonizedTCGAData
Package Short Url https://bioconductor.org/packages/HarmonizedTCGAData/
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