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HiContactsData

This is the development version of HiContactsData; for the stable release version, see HiContactsData.

HiContacts companion data package

Bioconductor version: Development (3.18)

Provides a collection of Hi-C files (pairs, (m)cool and fastq). These datasets can be read into R and further investigated and visualized with the HiContacts package. Data includes yeast Hi-C data generated by the Koszul lab from the Pasteur Institute.

Author: Jacques Serizay [aut, cre]

Maintainer: Jacques Serizay <jacquesserizay at gmail.com>

Citation (from within R, enter citation("HiContactsData")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("HiContactsData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HiContactsData")
HiContactsData HTML R Script
Reference Manual PDF
LICENSE Text

Details

biocViews ExperimentData, ExperimentHub, SequencingData
Version 1.3.0
License MIT + file LICENSE
Depends ExperimentHub
Imports BiocFileCache, AnnotationHub
Linking To
Suggests testthat, methods, BiocStyle, knitr, rmarkdown
System Requirements
Enhances
URL https://github.com/js2264/HiContactsData
Bug Reports https://github.com/js2264/HiContactsData/issues
See More
Depends On Me
Imports Me
Suggests Me HiCExperiment, HiContacts, HiCool
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package HiContactsData_1.3.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/HiContactsData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/HiContactsData
Package Short Url https://bioconductor.org/packages/HiContactsData/
Package Downloads Report Download Stats