This site is a development preview. As such the content and styling may not be final and is subject to change before going into production. To see more information about the redesign click here.

Menu

Documentation:

R / CRAN packages and documentation

Support

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

JASPAR2016

This is the development version of JASPAR2016; for the stable release version, see JASPAR2016.

Data package for JASPAR 2016

Bioconductor version: Development (3.18)

Data package for JASPAR 2016. To search this databases, please use the package TFBSTools (>= 1.8.1).

Author: Ge Tan <ge_tan at live.com>

Maintainer: Ge Tan <ge_tan at live.com>

Citation (from within R, enter citation("JASPAR2016")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("JASPAR2016")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews ExperimentData, GeneRegulation, MotifAnnotation
Version 1.29.1
License GPL-2
Depends R (>= 3.2.2), methods
Imports
Linking To
Suggests
System Requirements
Enhances
URL http://jaspar.genereg.net/
See More
Depends On Me
Imports Me ATACCoGAPS
Suggests Me CAGEWorkflow, chromVAR, TFBSTools
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package JASPAR2016_1.29.1.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/JASPAR2016
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/JASPAR2016
Package Short Url https://bioconductor.org/packages/JASPAR2016/
Package Downloads Report Download Stats