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KEGGandMetacoreDzPathwaysGEO

This is the development version of KEGGandMetacoreDzPathwaysGEO; for the stable release version, see KEGGandMetacoreDzPathwaysGEO.

Disease Datasets from GEO

Bioconductor version: Development (3.18)

This is a collection of 18 data sets for which the phenotype is a disease with a corresponding pathway in either KEGG or metacore database.This collection of datasets were used as gold standard in comparing gene set analysis methods.

Author: Gaurav Bhatti

Maintainer: Gaurav Bhatti <gbhatti at med.wayne.edu>

Citation (from within R, enter citation("KEGGandMetacoreDzPathwaysGEO")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("KEGGandMetacoreDzPathwaysGEO")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("KEGGandMetacoreDzPathwaysGEO")
KEGGandMetacoreDzPathwaysGEO Vignette PDF R Script
Reference Manual PDF

Details

biocViews ExperimentData, GEO
Version 1.21.0
License GPL-2
Depends R (>= 2.15.0)
Imports Biobase, BiocGenerics
Linking To
Suggests
System Requirements
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Depends On Me
Imports Me GSEABenchmarkeR
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Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package KEGGandMetacoreDzPathwaysGEO_1.21.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/KEGGandMetacoreDzPathwaysGEO
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/KEGGandMetacoreDzPathwaysGEO
Package Short Url https://bioconductor.org/packages/KEGGandMetacoreDzPathwaysGEO/
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