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MouseGastrulationData

This is the development version of MouseGastrulationData; for the stable release version, see MouseGastrulationData.

Single-Cell -omics Data across Mouse Gastrulation and Early Organogenesis

Bioconductor version: Development (3.18)

Provides processed and raw count data for single-cell RNA sequencing, single-cell ATAC-seq, and seqFISH (spatial transcriptomic) experiments performed along a timecourse of mouse gastrulation and early organogenesis.

Author: Jonathan Griffiths [aut, cre], Aaron Lun [aut]

Maintainer: Jonathan Griffiths <jonathan.griffiths.94 at gmail.com>

Citation (from within R, enter citation("MouseGastrulationData")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MouseGastrulationData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MouseGastrulationData")
Available datasets HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews ExperimentData, ExperimentHub, ExpressionData, Mus_musculus_Data, RNASeqData, SequencingData, SingleCellData
Version 1.15.0
License GPL-3
Depends R (>= 4.1), SingleCellExperiment, SummarizedExperiment, SpatialExperiment
Imports methods, ExperimentHub, BiocGenerics, S4Vectors, BumpyMatrix
Linking To
Suggests BiocStyle, knitr, rmarkdown
System Requirements
Enhances
URL https://github.com/MarioniLab/MouseGastrulationData
Bug Reports https://github.com/MarioniLab/MouseGastrulationData/issues
See More
Depends On Me OSCA.multisample
Imports Me
Suggests Me miloR
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MouseGastrulationData_1.15.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/MouseGastrulationData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MouseGastrulationData
Package Short Url https://bioconductor.org/packages/MouseGastrulationData/
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