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RTCGA.rnaseq

This is the development version of RTCGA.rnaseq; for the stable release version, see RTCGA.rnaseq.

Rna-seq datasets from The Cancer Genome Atlas Project

Bioconductor version: Development (3.18)

Package provides rna-seq datasets from The Cancer Genome Atlas Project for all cohorts types from http://gdac.broadinstitute.org/. Rna-seq data format is explained here https://wiki.nci.nih.gov/display/TCGA/RNASeq+Version+2. Data source is illumina hiseq Level 3 RSEM normalized expression data. Data from 2015-11-01 snapshot.

Author: Marcin Kosinski <m.p.kosinski at gmail.com>

Maintainer: Marcin Kosinski <m.p.kosinski at gmail.com>

Citation (from within R, enter citation("RTCGA.rnaseq")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("RTCGA.rnaseq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RTCGA.rnaseq")
Using RTCGA to download RNAseq data as included in RTCGA.rnaseq HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Annotation Data, ExperimentData
Version 20151101.31.0
License GPL-2
Depends R (>= 3.2.0), RTCGA
Imports
Linking To
Suggests knitr, rmarkdown
System Requirements
Enhances
URL
Bug Reports https://github.com/RTCGA/RTCGA/issues
See More
Depends On Me
Imports Me
Suggests Me RTCGA, TDbasedUFEadv
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RTCGA.rnaseq_20151101.31.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/RTCGA.rnaseq
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RTCGA.rnaseq
Package Short Url https://bioconductor.org/packages/RTCGA.rnaseq/
Package Downloads Report Download Stats