This site is a development preview. As such the content and styling may not be final and is subject to change before going into production. To see more information about the redesign click here.

Menu

Documentation:

R / CRAN packages and documentation

Support

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

clustifyrdatahub

This is the development version of clustifyrdatahub; for the stable release version, see clustifyrdatahub.

External data sets for clustifyr in ExperimentHub

Bioconductor version: Development (3.18)

References made from external single-cell mRNA sequencing data sets, stored as average gene expression matrices. For use with clustifyr to assign cell type identities.

Author: Rui Fu [aut] , Kent Riemondy [aut, cre] , RNA Bioscience Initiative [fnd], Austin Gillen [ctb] , Jay Hesselberth [ctb] , Sidhant Puntambekar [ctb]

Maintainer: Kent Riemondy <kent.riemondy at cuanschutz.edu>

Citation (from within R, enter citation("clustifyrdatahub")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("clustifyrdatahub")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("clustifyrdatahub")
clustifyrdatahub HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews ExperimentData, ExperimentHub, ExpressionData, MicroarrayData, PackageTypeData, RNASeqData, SequencingData, SingleCellData
Version 1.11.0
License MIT + file LICENSE
Depends R (>= 4.0), ExperimentHub
Imports utils
Linking To
Suggests clustifyr, Seurat, usethis, rmarkdown, knitr, tidyr, BiocStyle
System Requirements
Enhances
URL https://rnabioco.github.io/clustifyrdatahub/
Bug Reports https://github.com/rnabioco/clustifyrdatahub/issues
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package clustifyrdatahub_1.11.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/clustifyrdatahub
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/clustifyrdatahub
Package Short Url https://bioconductor.org/packages/clustifyrdatahub/
Package Downloads Report Download Stats