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curatedAdipoRNA

This is the development version of curatedAdipoRNA; for the stable release version, see curatedAdipoRNA.

A Curated RNA-Seq Dataset of MDI-induced Differentiated Adipocytes (3T3-L1)

Bioconductor version: Development (3.18)

A curated dataset of RNA-Seq samples. The samples are MDI-induced pre-phagocytes (3T3-L1) at different time points/stage of differentiation. The package document the data collection, pre-processing and processing. In addition to the documentation, the package contains the scripts that was used to generated the data.

Author: Mahmoud Ahmed [aut, cre]

Maintainer: Mahmoud Ahmed <mahmoud.s.fahmy at students.kasralainy.edu.eg>

Citation (from within R, enter citation("curatedAdipoRNA")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("curatedAdipoRNA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("curatedAdipoRNA")
Using curatedAdipoRNA HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews ExperimentData, GEO, RNASeqData, SequencingData
Version 1.17.0
License GPL-3
Depends R (>= 3.6), SummarizedExperiment
Imports
Linking To
Suggests knitr, rmarkdown, DESeq2, fastqcr, devtools, testthat, readr, dplyr, tidyr, ggplot2, S4Vectors
System Requirements
Enhances
URL https://github.com/MahShaaban/curatedAdipoRNA
Bug Reports https://github.com/MahShaaban/curatedAdipoRNA/issues
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package curatedAdipoRNA_1.17.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/curatedAdipoRNA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/curatedAdipoRNA
Package Short Url https://bioconductor.org/packages/curatedAdipoRNA/
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