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curatedTBData

This is the development version of curatedTBData; for the stable release version, see curatedTBData.

Curation of existing 49 tuberculosis transcriptomic studies

Bioconductor version: Development (3.18)

The curatedTBData is an R package that provides standardized, curated tuberculosis(TB) transcriptomic studies. The initial release of the package contains 49 studies. The curatedTBData package allows users to access tuberculosis trancriptomic efficiently and to make efficient comparison for different TB gene signatures across multiple datasets.

Author: Xutao Wang [aut, cre], W. Evan Johnson [aut], Prasad Patil [aut]

Maintainer: Xutao Wang <xutaow at bu.edu>

Citation (from within R, enter citation("curatedTBData")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("curatedTBData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("curatedTBData")
curatedTBData HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews ExperimentData, ExperimentHub, GEO, Homo_sapiens_Data
Version 1.7.0
License MIT + file LICENSE
Depends R (>= 4.1.0)
Imports AnnotationHub, ExperimentHub, MultiAssayExperiment, rlang, stats
Linking To
Suggests BiocStyle, DT, dplyr, HGNChelper, knitr, methods, rmarkdown, SummarizedExperiment, sva, testthat
System Requirements
Enhances
URL https://github.com/compbiomed/curatedTBData
Bug Reports https://github.com/compbiomed/curatedTBData/issues
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package curatedTBData_1.7.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/curatedTBData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/curatedTBData
Package Short Url https://bioconductor.org/packages/curatedTBData/
Package Downloads Report Download Stats