davidTiling

This is the development version of davidTiling; for the stable release version, see davidTiling.

Data and analysis scripts for David, Huber et al. yeast tiling array paper

Bioconductor version: Development (3.18)

This package contains the data for the paper by L. David et al. in PNAS 2006 (PMID 16569694): 8 CEL files of Affymetrix genechips, an ExpressionSet object with the raw feature data, a probe annotation data structure for the chip and the yeast genome annotation (GFF file) that was used. In addition, some custom-written analysis functions are provided, as well as R scripts in the scripts directory.

Author: Wolfgang Huber <huber at ebi.ac.uk>, Joern Toedling <toedling at ebi.ac.uk>

Maintainer: Wolfgang Huber <huber at ebi.ac.uk>

Citation (from within R, enter citation("davidTiling")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("davidTiling")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation


Reference Manual	PDF

Details

biocViews	ExperimentData, Genome, MicroarrayData, ReproducibleResearch, Saccharomyces_cerevisiae_Data
Version	1.41.0
License	LGPL
Depends	R (>= 2.10), Biobase(>= 2.5.5), tilingArray, GO.db
Imports
Linking To
Suggests
System Requirements
Enhances
URL	http://www.ebi.ac.uk/huber

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	davidTiling_1.41.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/davidTiling
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/davidTiling
Package Short Url	https://bioconductor.org/packages/davidTiling/
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