This site is a development preview. As such the content and styling may not be final and is subject to change before going into production. To see more information about the redesign click here.

Menu

Documentation:

R / CRAN packages and documentation

Support

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

derfinderData

This is the development version of derfinderData; for the stable release version, see derfinderData.

Processed BigWigs from BrainSpan for examples

Bioconductor version: Development (3.18)

Processed 22 samples from BrainSpan keeping only the information for chromosome 21. Data is stored in the BigWig format and is used for examples in other packages.

Author: Leonardo Collado-Torres [aut, cre] , Andrew Jaffe [aut] , Jeffrey Leek [aut, ths]

Maintainer: Leonardo Collado-Torres <lcolladotor at gmail.com>

Citation (from within R, enter citation("derfinderData")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("derfinderData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("derfinderData")
Introduction to derfinderData HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews ExperimentData, Homo_sapiens_Data, RNASeqData
Version 2.19.0
License Artistic-2.0
Depends R (>= 3.5.0)
Imports
Linking To
Suggests sessioninfo, knitr (>= 1.6), RefManageR, rmarkdown (>= 0.3.3), BiocStyle
System Requirements
Enhances
URL https://github.com/leekgroup/derfinderData
Bug Reports https://github.com/leekgroup/derfinderData/issues
See More
Depends On Me
Imports Me
Suggests Me derfinder, derfinderPlot
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package derfinderData_2.19.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/derfinderData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/derfinderData
Package Short Url https://bioconductor.org/packages/derfinderData/
Package Downloads Report Download Stats