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easierData

This is the development version of easierData; for the stable release version, see easierData.

easier internal data and exemplary dataset from IMvigor210CoreBiologies package

Bioconductor version: Development (3.18)

Access to internal data required for the functional performance of easier package and exemplary bladder cancer dataset with both processed RNA-seq data and information on response to ICB therapy generated by Mariathasan et al. "TGF-B attenuates tumour response to PD-L1 blockade by contributing to exclusion of T cells", published in Nature, 2018 [doi:10.1038/nature25501](https://doi.org/10.1038/nature25501). The data is made available via [`IMvigor210CoreBiologies`](http://research-pub.gene.com/IMvigor210CoreBiologies/) package under the CC-BY license.

Author: Oscar Lapuente-Santana [aut, cre] , Federico Marini [aut] , Arsenij Ustjanzew [aut] , Francesca Finotello [aut] , Federica Eduati [aut]

Maintainer: Oscar Lapuente-Santana <o.lapuente.santana at tue.nl>

Citation (from within R, enter citation("easierData")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("easierData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("easierData")
easier data HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews CancerData, ExperimentData, ExperimentHub, ImmunoOncologyData, RNASeqData, ReproducibleResearch
Version 1.7.0
License MIT + file LICENSE
Depends R (>= 4.1.0)
Imports ExperimentHub, AnnotationHub, utils, SummarizedExperiment
Linking To
Suggests knitr, rmarkdown, BiocStyle, testthat (>= 3.0.0)
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me easier
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package easierData_1.7.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/easierData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/easierData
Package Short Url https://bioconductor.org/packages/easierData/
Package Downloads Report Download Stats