lumiBarnes

This is the development version of lumiBarnes; for the stable release version, see lumiBarnes.

Barnes Benchmark Illumina Tissues Titration Data

Bioconductor version: Development (3.18)

The Barnes benchmark dataset can be used to evaluate the algorithms for Illumina microarrays. It measured a titration series of two human tissues, blood and placenta, and includes six samples with the titration ratio of blood and placenta as 100:0, 95:5, 75:25, 50:50, 25:75 and 0:100. The samples were hybridized on HumanRef-8 BeadChip (Illumina, Inc) in duplicate. The data is loaded as an LumiBatch Object (see documents in the lumi package).

Author: Pan Du

Maintainer: Pan Du <dupan at northwestern.edu>

Citation (from within R, enter citation("lumiBarnes")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("lumiBarnes")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation


Reference Manual	PDF

Details

biocViews	ChipOnChipData, ExperimentData, MicroarrayData, Tissue
Version	1.41.0
License	LGPL
Depends	R (>= 2.0), Biobase(>= 2.5.5), lumi(>= 1.1.0)
Imports
Linking To
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Depends On Me
Imports Me
Suggests Me	arrayMvout, lumi
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	lumiBarnes_1.41.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/lumiBarnes
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/lumiBarnes
Package Short Url	https://bioconductor.org/packages/lumiBarnes/
Package Downloads Report	Download Stats