This site is a development preview. As such the content and styling may not be final and is subject to change before going into production. To see more information about the redesign click here.

Menu

Documentation:

R / CRAN packages and documentation

Support

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

mtbls2

This is the development version of mtbls2; for the stable release version, see mtbls2.

MetaboLights MTBLS2: Comparative LC/MS-based profiling of silver nitrate-treated Arabidopsis thaliana leaves of wild-type and cyp79B2 cyp79B3 double knockout plants. Böttcher et al. (2004)

Bioconductor version: Development (3.18)

Indole-3-acetaldoxime (IAOx) represents an early intermediate of the biosynthesis of a variety of indolic secondary metabolites including the phytoanticipin indol-3-ylmethyl glucosinolate and the phytoalexin camalexin (3-thiazol-2'-yl-indole). Arabidopsis thaliana cyp79B2 cyp79B3 double knockout plants are completely impaired in the conversion of tryptophan to indole-3-acetaldoxime and do not accumulate IAOx-derived metabolites any longer. Consequently, comparative analysis of wild-type and cyp79B2 cyp79B3 plant lines has the potential to explore the complete range of IAOx-derived indolic secondary metabolites.

Author: Steffen Neumann <sneumann at ipb-halle.de>

Maintainer: Steffen Neumann <sneumann at ipb-halle.de>

Citation (from within R, enter citation("mtbls2")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("mtbls2")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF
NEWS Text

Details

biocViews ExperimentData, MassSpectrometryData, RepositoryData
Version 1.31.0
License CC0
Depends R (>= 2.10)
Imports
Linking To
Suggests xcms(>= 3.13.8), CAMERA, Risa(>= 1.0.0), knitr, Heatplus, pcaMethods, sp, rmarkdown
System Requirements
Enhances
URL http://www.ebi.ac.uk/metabolights/MTBLS2 https://github.com/sneumann/mtbls2
See More
Depends On Me
Imports Me
Suggests Me IPO, yamss
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package mtbls2_1.31.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/mtbls2
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/mtbls2
Package Short Url https://bioconductor.org/packages/mtbls2/
Package Downloads Report Download Stats