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mtbls2

MetaboLights MTBLS2: Comparative LC/MS-based profiling of silver nitrate-treated Arabidopsis thaliana leaves of wild-type and cyp79B2 cyp79B3 double knockout plants. Böttcher et al. (2004)

Bioconductor version: Release (3.17)

Indole-3-acetaldoxime (IAOx) represents an early intermediate of the biosynthesis of a variety of indolic secondary metabolites including the phytoanticipin indol-3-ylmethyl glucosinolate and the phytoalexin camalexin (3-thiazol-2'-yl-indole). Arabidopsis thaliana cyp79B2 cyp79B3 double knockout plants are completely impaired in the conversion of tryptophan to indole-3-acetaldoxime and do not accumulate IAOx-derived metabolites any longer. Consequently, comparative analysis of wild-type and cyp79B2 cyp79B3 plant lines has the potential to explore the complete range of IAOx-derived indolic secondary metabolites.

Author: Steffen Neumann <sneumann at ipb-halle.de>

Maintainer: Steffen Neumann <sneumann at ipb-halle.de>

Citation (from within R, enter citation("mtbls2")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("mtbls2")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF
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Details

biocViews ExperimentData, MassSpectrometryData, RepositoryData
Version 1.30.0
License CC0
Depends R (>= 2.10)
Imports
Linking To
Suggests xcms(>= 3.13.8), CAMERA, Risa(>= 1.0.0), knitr, Heatplus, pcaMethods, sp, rmarkdown
System Requirements
Enhances
URL http://www.ebi.ac.uk/metabolights/MTBLS2 https://github.com/sneumann/mtbls2
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Depends On Me
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Suggests Me IPO, yamss
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