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signatureSearchData

This is the development version of signatureSearchData; for the stable release version, see signatureSearchData.

Datasets for signatureSearch package

Bioconductor version: Development (3.18)

CMAP/LINCS hdf5 databases and other annotations used for signatureSearch software package.

Author: Yuzhu Duan <yduan004 at ucr.edu>, Brendan Gongol <bgong001 at ucr.edu>, Thomas Girke <thomas.girke at ucr.edu>

Maintainer: Brendan Gongol <bgong001 at ucr.edu>

Citation (from within R, enter citation("signatureSearchData")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("signatureSearchData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("signatureSearchData")
signatureSearchData HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews ExperimentData, ExperimentHub, ExpressionData
Version 1.15.0
License Artistic-2.0
Depends R (>= 3.6)
Imports ExperimentHub, utils, affy, limma, Biobase, magrittr, dplyr, R.utils, stats, rhdf5
Linking To
Suggests knitr, rmarkdown
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me
Suggests Me signatureSearch
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package signatureSearchData_1.15.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/signatureSearchData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/signatureSearchData
Package Short Url https://bioconductor.org/packages/signatureSearchData/
Package Downloads Report Download Stats