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tuberculosis

This is the development version of tuberculosis; for the stable release version, see tuberculosis.

Tuberculosis Gene Expression Data for Machine Learning

Bioconductor version: Development (3.18)

The tuberculosis R/Bioconductor package features tuberculosis gene expression data for machine learning. All human samples from GEO that did not come from cell lines, were not taken postmortem, and did not feature recombination have been included. The package has more than 10,000 samples from both microarray and sequencing studies that have been processed from raw data through a hyper-standardized, reproducible pipeline.

Author: Lucas Schiffer [aut, cre]

Maintainer: Lucas Schiffer <schiffer.lucas at gmail.com>

Citation (from within R, enter citation("tuberculosis")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("tuberculosis")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tuberculosis")
tuberculosis HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews ExperimentData, ExperimentHub, ExpressionData, Homo_sapiens_Data, MicroarrayData, ReproducibleResearch, SequencingData
Version 1.7.0
License Artistic-2.0
Depends R (>= 4.1.0), SummarizedExperiment
Imports AnnotationHub, ExperimentHub, S4Vectors, dplyr, magrittr, purrr, rlang, stringr, tibble, tidyr
Linking To
Suggests BiocStyle, ggplot2, hrbrthemes, knitr, readr, rmarkdown, scater, usethis, utils
System Requirements
Enhances
URL https://github.com/schifferl/tuberculosis
Bug Reports https://github.com/schifferl/tuberculosis/issues
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package tuberculosis_1.7.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/tuberculosis
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/tuberculosis
Package Short Url https://bioconductor.org/packages/tuberculosis/
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