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ArrayExpress

Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet

Bioconductor version: Release (3.17)

Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet.

Author: Audrey Kauffmann, Ibrahim Emam, Michael Schubert, Jose Marugan

Maintainer: Jose Marugan <jcmarca at ebi.ac.uk>

Citation (from within R, enter citation("ArrayExpress")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ArrayExpress")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ArrayExpress")
ArrayExpress: Import and convert ArrayExpress data sets into R object PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataImport, Microarray, OneChannel, Software, TwoChannel
Version 1.60.0
In Bioconductor since BioC 2.3 (R-2.8) (15 years)
License Artistic-2.0
Depends R (>= 2.9.0), Biobase(>= 2.4.0)
Imports oligo, limma, httr, utils, jsonlite, rlang, tools, methods
Linking To
Suggests affy
System Requirements
Enhances
URL
See More
Depends On Me DrugVsDisease, maEndToEnd
Imports Me
Suggests Me Hiiragi2013
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ArrayExpress_1.60.0.tar.gz
Windows Binary ArrayExpress_1.60.0.zip
macOS Binary (x86_64) ArrayExpress_1.60.0.tgz
macOS Binary (arm64) ArrayExpress_1.60.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ArrayExpress
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ArrayExpress
Bioc Package Browser https://code.bioconductor.org/browse/ArrayExpress/
Package Short Url https://bioconductor.org/packages/ArrayExpress/
Package Downloads Report Download Stats