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CMA

Synthesis of microarray-based classification

Bioconductor version: Release (3.17)

This package provides a comprehensive collection of various microarray-based classification algorithms both from Machine Learning and Statistics. Variable Selection, Hyperparameter tuning, Evaluation and Comparison can be performed combined or stepwise in a user-friendly environment.

Author: Martin Slawski <ms at cs.uni-sb.de>, Anne-Laure Boulesteix <boulesteix at ibe.med.uni-muenchen.de>, Christoph Bernau <bernau at ibe.med.uni-muenchen.de>.

Maintainer: Roman Hornung <hornung at ibe.med.uni-muenchen.de>

Citation (from within R, enter citation("CMA")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CMA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CMA")
CMA_vignette.pdf PDF R Script
Reference Manual PDF

Details

biocViews Classification, DecisionTree, Software
Version 1.58.0
In Bioconductor since BioC 2.3 (R-2.8) (15 years)
License GPL (>= 2)
Depends R (>= 2.10), methods, stats, Biobase
Imports
Linking To
Suggests MASS, class, nnet, glmnet, e1071, randomForest, plsgenomics, gbm, mgcv, corpcor, limma, st, mvtnorm
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CMA_1.58.0.tar.gz
Windows Binary CMA_1.58.0.zip
macOS Binary (x86_64) CMA_1.58.0.tgz
macOS Binary (arm64) CMA_1.58.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/CMA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CMA
Bioc Package Browser https://code.bioconductor.org/browse/CMA/
Package Short Url https://bioconductor.org/packages/CMA/
Package Downloads Report Download Stats