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CancerSubtypes

Cancer subtypes identification, validation and visualization based on multiple genomic data sets

Bioconductor version: Release (3.17)

CancerSubtypes integrates the current common computational biology methods for cancer subtypes identification and provides a standardized framework for cancer subtype analysis based multi-omics data, such as gene expression, miRNA expression, DNA methylation and others.

Author: Taosheng Xu [aut, cre]

Maintainer: Taosheng Xu <taosheng.x at gmail.com>

Citation (from within R, enter citation("CancerSubtypes")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CancerSubtypes")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CancerSubtypes")
CancerSubtypes HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Clustering, GeneExpression, Software, Visualization
Version 1.26.0
In Bioconductor since BioC 3.4 (R-3.3) (7 years)
License GPL (>= 2)
Depends R (>= 4.0), sigclust, NMF
Imports cluster, impute, limma, ConsensusClusterPlus, grDevices, survival
Linking To
Suggests BiocGenerics, knitr, RTCGA.mRNA, rmarkdown
System Requirements
Enhances
URL https://github.com/taoshengxu/CancerSubtypes
Bug Reports https://github.com/taoshengxu/CancerSubtypes/issues
See More
Depends On Me
Imports Me
Suggests Me
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Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CancerSubtypes_1.26.0.tar.gz
Windows Binary CancerSubtypes_1.26.0.zip (64-bit only)
macOS Binary (x86_64) CancerSubtypes_1.26.0.tgz
macOS Binary (arm64) CancerSubtypes_1.26.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/CancerSubtypes
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CancerSubtypes
Bioc Package Browser https://code.bioconductor.org/browse/CancerSubtypes/
Package Short Url https://bioconductor.org/packages/CancerSubtypes/
Package Downloads Report Download Stats