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DELocal

Identifies differentially expressed genes with respect to other local genes

Bioconductor version: Release (3.17)

The goal of DELocal is to identify DE genes compared to their neighboring genes from the same chromosomal location. It has been shown that genes of related functions are generally very far from each other in the chromosome. DELocal utilzes this information to identify DE genes comparing with their neighbouring genes.

Author: Rishi Das Roy [aut, cre]

Maintainer: Rishi Das Roy <rishi.dasroy at gmail.com>

Citation (from within R, enter citation("DELocal")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DELocal")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DELocal")
DELocal HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews DifferentialExpression, GeneExpression, RNASeq, Software, Transcriptomics
Version 1.0.0
In Bioconductor since BioC 3.17 (R-4.3) (< 6 months)
License MIT + file LICENSE
Depends
Imports DESeq2, dplyr, reshape2, limma, SummarizedExperiment, ggplot2, matrixStats, stats
Linking To
Suggests biomaRt, knitr, PCRedux, rmarkdown, stringr
System Requirements
Enhances
URL https://github.com/dasroy/DELocal
Bug Reports https://github.com/dasroy/DELocal/issues
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package DELocal_1.0.0.tar.gz
Windows Binary DELocal_1.0.0.zip
macOS Binary (x86_64) DELocal_1.0.0.tgz
macOS Binary (arm64) DELocal_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/DELocal
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/DELocal
Bioc Package Browser https://code.bioconductor.org/browse/DELocal/
Package Short Url https://bioconductor.org/packages/DELocal/
Package Downloads Report Download Stats