This site is a development preview. As such the content and styling may not be final and is subject to change before going into production. To see more information about the redesign click here.

Menu

Documentation:

R / CRAN packages and documentation

Support

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

Doscheda

A DownStream Chemo-Proteomics Analysis Pipeline

Bioconductor version: Release (3.17)

Doscheda focuses on quantitative chemoproteomics used to determine protein interaction profiles of small molecules from whole cell or tissue lysates using Mass Spectrometry data. The package provides a shiny application to run the pipeline, several visualisations and a downloadable report of an experiment.

Author: Bruno Contrino, Piero Ricchiuto

Maintainer: Bruno Contrino <br1contrino at yahoo.co.uk>

Citation (from within R, enter citation("Doscheda")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Doscheda")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Doscheda")
Doscheda HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataImport, MassSpectrometry, Normalization, Preprocessing, Proteomics, QualityControl, Regression, Software
Version 1.22.0
In Bioconductor since BioC 3.6 (R-3.4) (6 years)
License GPL-3
Depends R (>= 3.4)
Imports methods, drc, stats, httr, jsonlite, reshape2, vsn, affy, limma, stringr, ggplot2, graphics, grDevices, calibrate, corrgram, gridExtra, DT, shiny, shinydashboard, readxl, prodlim, matrixStats
Linking To
Suggests BiocStyle, knitr, rmarkdown, testthat
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Doscheda_1.22.0.tar.gz
Windows Binary Doscheda_1.22.0.zip
macOS Binary (x86_64) Doscheda_1.22.0.tgz
macOS Binary (arm64) Doscheda_1.22.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Doscheda
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Doscheda
Bioc Package Browser https://code.bioconductor.org/browse/Doscheda/
Package Short Url https://bioconductor.org/packages/Doscheda/
Package Downloads Report Download Stats