This site is a development preview. As such the content and styling may not be final and is subject to change before going into production. To see more information about the redesign click here.

FELLA

Interpretation and enrichment for metabolomics data

Bioconductor version: Release (3.17)

Enrichment of metabolomics data using KEGG entries. Given a set of affected compounds, FELLA suggests affected reactions, enzymes, modules and pathways using label propagation in a knowledge model network. The resulting subnetwork can be visualised and exported.

Author: Sergio Picart-Armada [aut, cre], Francesc Fernandez-Albert [aut], Alexandre Perera-Lluna [aut]

Maintainer: Sergio Picart-Armada <sergi.picart at upc.edu>

Citation (from within R, enter citation("FELLA")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("FELLA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("FELLA")
Example: a fatty liver study on Mus musculus PDF R Script
Example: oxybenzone exposition in gilt-head bream PDF R Script
FELLA PDF R Script
Quick start HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews GO, GraphAndNetwork, KEGG, Metabolomics, Network, NetworkEnrichment, Pathways, Software
Version 1.20.0
In Bioconductor since BioC 3.7 (R-3.5) (5.5 years)
License GPL-3
Depends R (>= 3.5.0)
Imports methods, igraph, Matrix, KEGGREST, plyr, stats, graphics, utils
Linking To
Suggests shiny, DT, magrittr, visNetwork, knitr, BiocStyle, rmarkdown, testthat, biomaRt, org.Hs.eg.db, org.Mm.eg.db, AnnotationDbi, GOSemSim
System Requirements
Enhances
URL
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package FELLA_1.20.0.tar.gz
Windows Binary FELLA_1.20.0.zip
macOS Binary (x86_64) FELLA_1.20.0.tgz
macOS Binary (arm64) FELLA_1.20.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/FELLA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/FELLA
Bioc Package Browser https://code.bioconductor.org/browse/FELLA/
Package Short Url https://bioconductor.org/packages/FELLA/
Package Downloads Report Download Stats