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GA4GHclient

A Bioconductor package for accessing GA4GH API data servers

Bioconductor version: Release (3.17)

GA4GHclient provides an easy way to access public data servers through Global Alliance for Genomics and Health (GA4GH) genomics API. It provides low-level access to GA4GH API and translates response data into Bioconductor-based class objects.

Author: Welliton Souza [aut, cre], Benilton Carvalho [ctb], Cristiane Rocha [ctb]

Maintainer: Welliton Souza <well309 at gmail.com>

Citation (from within R, enter citation("GA4GHclient")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GA4GHclient")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GA4GHclient")
GA4GHclient HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataRepresentation, Software, ThirdPartyClient
Version 1.24.0
In Bioconductor since BioC 3.5 (R-3.4) (6.5 years)
License GPL (>= 2)
Depends R (>= 3.5.0), S4Vectors
Imports BiocGenerics, Biostrings, dplyr, GenomeInfoDb, GenomicRanges, httr, IRanges, jsonlite, methods, VariantAnnotation
Linking To
Suggests AnnotationDbi, BiocStyle, DT, knitr, org.Hs.eg.db, rmarkdown, testthat, TxDb.Hsapiens.UCSC.hg19.knownGene
System Requirements
Enhances
URL https://github.com/labbcb/GA4GHclient
Bug Reports https://github.com/labbcb/GA4GHclient/issues
See More
Depends On Me GA4GHshiny
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GA4GHclient_1.24.0.tar.gz
Windows Binary GA4GHclient_1.24.0.zip (64-bit only)
macOS Binary (x86_64) GA4GHclient_1.24.0.tgz
macOS Binary (arm64) GA4GHclient_1.24.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/GA4GHclient
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GA4GHclient
Bioc Package Browser https://code.bioconductor.org/browse/GA4GHclient/
Package Short Url https://bioconductor.org/packages/GA4GHclient/
Package Downloads Report Download Stats