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GA4GHshiny

Shiny application for interacting with GA4GH-based data servers

Bioconductor version: Release (3.17)

GA4GHshiny package provides an easy way to interact with data servers based on Global Alliance for Genomics and Health (GA4GH) genomics API through a Shiny application. It also integrates with Beacon Network.

Author: Welliton Souza [aut, cre], Benilton Carvalho [ctb], Cristiane Rocha [ctb], Elizabeth Borgognoni [ctb]

Maintainer: Welliton Souza <well309 at gmail.com>

Citation (from within R, enter citation("GA4GHshiny")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GA4GHshiny")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GA4GHshiny")
GA4GHshiny HTML R Script
Reference Manual PDF

Details

biocViews GUI, Software
Version 1.22.0
In Bioconductor since BioC 3.6 (R-3.4) (6 years)
License GPL-3
Depends GA4GHclient
Imports AnnotationDbi, BiocGenerics, dplyr, DT, GenomeInfoDb, openxlsx, GenomicFeatures, methods, purrr, S4Vectors, shiny, shinyjs, tidyr, shinythemes
Linking To
Suggests BiocStyle, org.Hs.eg.db, knitr, rmarkdown, testthat, TxDb.Hsapiens.UCSC.hg19.knownGene
System Requirements
Enhances
URL https://github.com/labbcb/GA4GHshiny
Bug Reports https://github.com/labbcb/GA4GHshiny/issues
See More
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GA4GHshiny_1.22.0.tar.gz
Windows Binary GA4GHshiny_1.22.0.zip
macOS Binary (x86_64) GA4GHshiny_1.22.0.tgz
macOS Binary (arm64) GA4GHshiny_1.22.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/GA4GHshiny
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GA4GHshiny
Bioc Package Browser https://code.bioconductor.org/browse/GA4GHshiny/
Package Short Url https://bioconductor.org/packages/GA4GHshiny/
Package Downloads Report Download Stats