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HubPub

Utilities to create and use Bioconductor Hubs

Bioconductor version: Release (3.17)

HubPub provides users with functionality to help with the Bioconductor Hub structures. The package provides the ability to create a skeleton of a Hub style package that the user can then populate with the necessary information. There are also functions to help add resources to the Hub package metadata files as well as publish data to the Bioconductor S3 bucket.

Author: Kayla Interdonato [aut, cre], Martin Morgan [aut]

Maintainer: Kayla Interdonato <kayla.morrell at roswellpark.org>

Citation (from within R, enter citation("HubPub")):

Installation

To install this package, start R (version "4.3") and enter: 

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("HubPub")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HubPub")
Creating A Hub Package: ExperimentHub or AnnotationHub HTML R Script
HubPub: Help with publication of Hub packages HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataImport, Infrastructure, Software, ThirdPartyClient
Version 1.8.0
In Bioconductor since BioC 3.13 (R-4.1) (2 years)
License Artistic-2.0
Depends
Imports available, usethis, biocthis, dplyr, aws.s3, fs, BiocManager, utils
Linking To
Suggests AnnotationHubData, ExperimentHubData, testthat, knitr, rmarkdown, BiocStyle
System Requirements
Enhances
URL
Bug Reports https://github.com/Bioconductor/HubPub/issues
See More
Depends On Me
Imports Me
Suggests Me AnnotationHub, AnnotationHubData, ExperimentHub, ExperimentHubData
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package HubPub_1.8.0.tar.gz
Windows Binary HubPub_1.8.0.zip
macOS Binary (x86_64) HubPub_1.8.0.tgz
macOS Binary (arm64) HubPub_1.8.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/HubPub
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/HubPub
Bioc Package Browser https://code.bioconductor.org/browse/HubPub/
Package Short Url https://bioconductor.org/packages/HubPub/
Package Downloads Report Download Stats