MLInterfaces
Uniform interfaces to R machine learning procedures for data in Bioconductor containers
Bioconductor version: Release (3.17)
This package provides uniform interfaces to machine learning code for data in R and Bioconductor containers.
Author: Vincent Carey [cre, aut] 
, Jess Mar [aut], Jason Vertrees [ctb], Laurent Gatto [ctb], Phylis Atieno [ctb] (Translated vignettes from Sweave to Rmarkdown / HTML.)
Maintainer: Vincent Carey <stvjc at channing.harvard.edu>
Citation (from within R, enter
citation("MLInterfaces")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MLInterfaces")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MLInterfaces")| A machine learning tutorial tutorial: applications of the Bioconductor MLInterfaces package to gene expression data | HTML | R Script |
| MLInterfaces 2.0 -- a new design | HTML | R Script |
| MLInterfaces Computer Cluster | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Classification, Clustering, Software |
| Version | 1.80.0 |
| In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 18 years) |
| License | LGPL |
| Depends | R (>= 3.5), Rcpp, methods, BiocGenerics(>= 0.13.11), Biobase, annotate, cluster |
| Imports | gdata, pls, sfsmisc, MASS, rpart, genefilter, fpc, ggvis, shiny, gbm, RColorBrewer, hwriter, threejs (>= 0.2.2), mlbench, stats4, tools, grDevices, graphics, stats, magrittr, SummarizedExperiment |
| Linking To | |
| Suggests | class, e1071, ipred, randomForest, gpls, pamr, nnet, ALL, hgu95av2.db, som, hu6800.db, lattice, caret (>= 5.07), golubEsets, ada, keggorthology, kernlab, mboost, party, klaR, BiocStyle, knitr, testthat |
| System Requirements | |
| Enhances | parallel |
| URL |
See More
| Depends On Me | pRoloc, SigCheck |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | MLInterfaces_1.80.0.tar.gz |
| Windows Binary | MLInterfaces_1.80.0.zip (64-bit only) |
| macOS Binary (x86_64) | MLInterfaces_1.80.0.tgz |
| macOS Binary (arm64) | MLInterfaces_1.80.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MLInterfaces |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MLInterfaces |
| Bioc Package Browser | https://code.bioconductor.org/browse/MLInterfaces/ |
| Package Short Url | https://bioconductor.org/packages/MLInterfaces/ |
| Package Downloads Report | Download Stats |