keggorthology

graph support for KO, KEGG Orthology

Bioconductor version: Release (3.17)

graphical representation of the Feb 2010 KEGG Orthology. The KEGG orthology is a set of pathway IDs that are not to be confused with the KEGG ortholog IDs.

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("keggorthology")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("keggorthology")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("keggorthology")

keggorthology overview	PDF	R Script
Reference Manual	PDF

Details

biocViews	GraphAndNetwork, KEGG, Pathways, Software, Visualization
Version	2.52.0
In Bioconductor since	BioC 2.6 (R-2.11) (13.5 years)
License	Artistic-2.0
Depends	R (>= 2.5.0), stats, graph, hgu95av2.db
Imports	AnnotationDbi, graph, DBI, graph, grDevices, methods, stats, tools, utils
Linking To
Suggests	RBGL, ALL
System Requirements
Enhances
URL

Depends On Me
Imports Me
Suggests Me	MLInterfaces
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	keggorthology_2.52.0.tar.gz
Windows Binary	keggorthology_2.52.0.zip
macOS Binary (x86_64)	keggorthology_2.52.0.tgz
macOS Binary (arm64)	keggorthology_2.52.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/keggorthology
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/keggorthology
Bioc Package Browser	https://code.bioconductor.org/browse/keggorthology/
Package Short Url	https://bioconductor.org/packages/keggorthology/
Package Downloads Report	Download Stats